PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02174.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 257aa    MW: 27193.7 Da    PI: 10.4096
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02174.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.81.1e-21182243260
                                   HHHHHHHHHCTGGGTTTSEES.SSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                                   F++k+ye++ d++++ ++sw   +g  n+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+Y
  Zmw_sc02174.1.g00030.1.am.mk 182 FVSKTYEMVADPATDAVVSWGvPDGagNTFVVWDPRELAASLLPRFFKHANFASFVRQLNIY 243
                                   9*******************9855445*********************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-14178249IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-18178244IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-22179248IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-17182243IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11182205IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11223235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11236248IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MYVLNYARDS REFAVRDAAG AGPQDASPLL APPGAPRWRS YLEQRGRGAR TTWTPALFAA  60
TAPGTYSMLA QESVGFIGRM AFGIWMHERS ISRNPLATAG ARGVSSRHVS QLGPSSSVLA  120
YMGRDAERPR QQQPAAPVHT TPAHAPAAQG KQSAMAPLVV KPEPLAAAGA PRPVDGAPPA  180
PFVSKTYEMV ADPATDAVVS WGVPDGAGNT FVVWDPRELA ASLLPRFFKH ANFASFVRQL  240
NIYVSTNSPA SSSASAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-141822432078Heat shock factor protein 1
5d5v_D3e-141822432987Heat shock factor protein 1
5d5v_B3e-141822432987Heat shock factor protein 1
5d5u_B3e-141822432987Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A096PTC41e-32A0A096PTC4_MAIZE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4407833